Alfredo Kalaitzis [cv], doctoral candidate

Sheffield Institute for Translational Neuroscience (SITraN)
Department of Neuroscience
The University of Sheffield
385a Glossop Road
Sheffield S10 2HQ
United Kingdom

Room B51
A.Kalaitzis at sheffield.ac.uk

Area:                 Machine Learning & Computational Biology                 http://www.dcs.shef.ac.uk/ml/
Supervisor:      Professor Neil D. Lawrence        http://staffwww.dcs.shef.ac.uk/people/N.Lawrence/

    Software
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GPTK: An R package for Gaussian process regression.

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GPREGE: An R package for Gaussian process ranking and estimation of gene expression time-series. Submitted to Bionconductor. (The full DellaGatta dataset is available [here])


    Publications and papers in preparation
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A. A. Kalaitzis, N. D. Lawrence. (2011) "Residual Component Analysis" submitted for review. [arXiv manuscript and source code]

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A. A. Kalaitzis, N. D. Lawrence. (2011) "A simple approach to ranking differentially expressed gene expression time-courses through Gaussian process regression" in BMC Bioinformatics 2011, 12:180. document


    Master's thesis
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A. A. Kalaitzis. (2009) "Image inpainting with Gaussian processes." M.Sc. Thesis, School of Informatics, The University of Edinburgh. Supervised by Christopher K.I. Williams.


    Talks
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A. A. Kalaitzis. (2011) "A simple approach to ranking differentially expressed gene expression time-courses through Gaussian process regression". Presented at MLSB2011, Vienna, Austria on 21/07/11. [Extended abstract]

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A. A. Kalaitzis. (2011) "Gaussian process regression for ranking differentially expressed gene expression time-courses". Presented at Sheffield Institute for Translational Neuroscience, Department of Neuroscience, University of Sheffield, U.K. on 11/04/11.